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PD Dr. habil. Bashar Ibrahim

Biosystem Analysis Research Group
Department of Mathematics and Computer Science
Friedrich Schiller University Jena

Ernst-Abbe-Platz 2
Room 3430
07743 Jena

Phone: +49 (3641) 9 46463  



Teaching  see @ Friedolin


My main research lies in the interface between mathematics, molecular biology, medicine and computational modeling providing
a systems approach to scientific discovery. My main areas of expertise are summarized shortly below:

  • Mathematical and computational systems biology
  • Multiscale and unconventional modeling, simulation, and analysis of complex systems
  • Non-linear global optimization techniques
  • Bifurcation analysis
  • Computational fluid dynamics
  • Systems Biology of the Cell-Cycle 
  • Application of formal sciences in biology, chemistry and  medicine

Selected Publications

Bashar Ibrahim (2017)
A Mathematical Framework for Kinetochore-Driven Activation Feedback in the Mitotic Checkpoint.
Bulletin of Mathematical Biology. 79 (5): 1183-1200

Bashar Ibrahim (2015)
In Silico Spatial Simulations Reveal that MCC Formation and Excess BubR1 are Required for Tight Inhibition of the Anaphase-Promoting Complex
Molecular BioSystems. 12: 2867 - 2877

Bashar Ibrahim (2015)
Systems Biology Modeling of Five Pathways for Regulation and Potent Inhibition of the Anaphase-Promoting Complex (APC/C): Pivotal Roles for MCC and BubR1
OMICS: A Journal of Integrative Biology. May 2015, 19(5): 294-305. 

Gerd Grünert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich (2010)
Rule-based spatial Modeling with Diffusing, Geometrically Constrained Molecules
BMC Bioinformatics, 11:307