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PD Dr. habil. Bashar Ibrahim

Biosystem Analysis Research Group
Department of Mathematics and Computer Science
Friedrich Schiller University Jena

Ernst-Abbe-Platz 2
Room 3430
07743 Jena

Phone: +49 (3641) 9 46463  



Teaching  see @ Friedolin


My main research lies in the interface between mathematics, molecular biology, medicine and computational modeling providing
a systems approach to scientific discovery. My main areas of expertise are summarized shortly below:

  • Mathematical and computational systems biology
  • Multiscale and unconventional modeling, simulation, and analysis of complex systems
  • Non-linear global optimization techniques
  • Bifurcation analysis
  • Computational fluid dynamics
  • Systems Biology of the Cell-Cycle 
  • Application of formal sciences in biology, chemistry and  medicine

Five Selected Publications

Bashar Ibrahim (2017)
A Mathematical Framework for Kinetochore-Driven Activation Feedback in the Mitotic Checkpoint
Bulletin of Mathematical Biology 79(5): 1183-1200

Richard Henze, Peter Dittrich, Bashar Ibrahim (2017)
A Dynamical Model for Activating and Silencing the Mitotic Checkpoint
Scientific Reports 7

Peter Kreyßig, Christian Wozar, Stephan Peter, Tomas Veloz, Bashar Ibrahim, Peter Dittrich (2014)
Effects of Small Particle Numbers on Long-Term Behaviour in Discrete Biochemical Systems
Bioinformatics 2014 Sep;30(17):i475-81

Ayse Koca Caydasi, Maiko Lohel, Gerd Grünert, Peter Dittrich, Gislene Pereira, Bashar Ibrahim (2012)
A Dynamical Model of the Spindle Position Checkpoint
Molecular Systems Biology, 8(582)

Gerd Grünert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich (2010)
Rule-based spatial modeling with diffusing, geometrically constrained molecules
BMC Bioinformatics, 11:307

Full list of Publications click here