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PD Dr. Bashar Ibrahim

Bioinformatics Chair
Faculty of Biological Sciences
Friedrich-Schiller-University Jena

Ernst-Abbe-Platz 2
Room 3427
07743 Jena

Phone: +49 (3641) 9 49585 



Teaching  see @ Friedolin


Our main research lies in the interface between mathematics, molecular biology, medicine and computational modeling providing
a systems approach to scientific discovery. The main areas of expertise are summarized shortly below:

  • Mitotic Transition Control Mechanisms
  • Mathematical and computational systems biology
  • Multiscale and unconventional modeling, simulation, and analysis of complex systems

Key Publications

Richard Henze, Peter Dittrich, Bashar Ibrahim* (2017)
A Dynamical Model for Activating and Silencing the Mitotic Checkpoint
Scientific Reports 7 (1), 3865

Peter Kreyßig, Christian Wozar, Stephan Peter, Tomas Veloz, Bashar Ibrahim*, Peter Dittrich (2014)
Effects of Small Particle Numbers on Long-Term Behaviour in Discrete Biochemical Systems
Bioinformatics 2014 Sep;30(17):i475-81

Ayse Koca Caydasi, Maiko Lohel, Gerd Grünert, Peter Dittrich, Gislene Pereira, Bashar Ibrahim* (2012)
A Dynamical Model of the Spindle Position Checkpoint
Molecular Systems Biology, 8(582)

Gerd Grünert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich (2010)
Rule-based spatial modeling with diffusing, geometrically constrained molecules
BMC Bioinformatics, 11:307

Full list of Publications click here