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Publications in 2007

Publications of the workgroup published in 2007

Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, Eberhard Schmidt (2007)
Stochastic effects in a compartmental model for mitotic checkpoint regulation
Journal of Integrative Bioinformatics, 4(3), 66, 2007
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Thomas Hinze, Sikander Hayat, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich (2007)
Hill Kinetics Meets P Systems.
In G. Eleftherakis, P. Kefalas, G. Paun, G. Rozenberg, A. Salomaa (Eds.) Membrane Computing, Series Lecture Notes in Computer Science, Vol. 4860, pp. 320-335, Springer Verlag, 2007

Thomas Hinze, Raphael Fassler, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich (2007)
Efficient Chemical Computing using Deterministic Reaction Systems with Prioritisation of Rules.
In M. Droste, M. Lohrey (Eds.) Proceedings 17. Theorietag Automaten und Formale Sprachen, pp. 68-73, University of Leipzig, 2007 (partially in German)

Thomas Hinze, Sikander Hayat, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich (2007)
Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo.
In: G. Eleftherakis, P. Kefalas, G. Paun (Eds.), Proceedings Eight Workshop on Membrane Computing (WMC8), Thessaloniki, pp. 363-381, SEERC Publishers, 2007

Peter Dittrich, Pietro Speroni di Fenizio (2007)
Chemical Organization Theory
Bull. Math. Biol., 69(4):1199-1231, 2007
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Florian Centler, Peter Dittrich (2007)
Chemical organizations in atmospheric photochemistries: a new method to analyze chemical reaction networks
Planet. Space Sci. , 55(4): 413-428, 2007
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Peter Dittrich, Pietro Speroni di Fenizio (2007)
Chemical Organization Theory
In: M. Al-Rubeai, M. Fussenegger (Eds.); Cell Engineering, Volume 5: Systems Biology, p. 361-393, Springer
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Naoki Matsumaru, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich (2007)
Chemical Organization Theory as a Theoretical Base for Chemical Computing
International Journal of Unconventional Computing, 3(4), 285-309
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Thorsten Lenser, Thomas Hinze, Bashar Ibrahim, Peter Dittrich (2007)
Towards Evolutionary Network Reconstruction Tools for Systems Biology
In: E. Marchiori, J.H. Moore, J.C. Rajapakse (Eds.), Proceedings EvoBio 2007, Valencia, Series Lecture Notes in Computer Science, Vol. 4447, pp. 132-142, Springer Verlag, 2007

Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich (2007)
Designing a chemical program using chemical organization theory
BMC Systems Biology, 1(Suppl 1):P26, 2007 - poster presentation, doi:10.1186/1752-0509-1-S1-P26
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Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich (2007)
Toward Organization-Oriented Chemical Programming: A Case Study with the Maximal Independent Set Problem
In: F. Dressler, I. Carreras (Eds.), Advances in Biologically Inspired Information Systems, (Series: Studies in Computational Intelligence, Vol. 69), p. 147-163, Springer, Berlin, doi: 10.1007/978-3-540-72693-7_8

Pietro Speroni di Fenizio, Peter Dittrich (2007)
Chemical Organizations at Different Spatial Scales
In: Proc. European Conference on Artificial Life (ECAL 2007), LNCS 4648, p. 1-11, Springer, Berlin, ISBN: 978-3-540-74912-7
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Peter Dittrich, Lars Winter (2007)
A Toy-Model of the Political System
In: Proc. of European Conference on Complex Systems (ECCS 2007), Dresden October 1-5, 2007 (accepted)

Peter Dittrich, Naoki Matsumaru (2007)
Organization-Oriented Chemical Programming
Hybrid Intelligent Systems, 2007. HIS 2007. 7th International Conference on (HIS 2007), 17-19 Sept. 2007, pages 8-23, IEEE DL
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Peter Dittrich, Bashar Ibrahim, Thomas Hinze, Thorsten Lenser, Naoki Matsumaru (2007)
Hierarchically Evolvable Components for Complex Systems: Biologically Inspired Algorithmic Design.
In J. Jost, D. Helbing, H. Kantz, A. Deutsch (Eds.) Proceedings of the European Conference on Complex Systems (ECCS2007), p. 85, Dresden University of Technology, 2007

Christian Knüpfer, Clemens Beckstein, Peter Dittrich (2007)
How to Formalise the Meaning of a Bio-Model: A Case Study
BMC Systems Biology 1 (Suppl 1), BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology - Meeting abstracts. Manchester, UK. 11-13 January 2007, p.28.
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